Biomass and reproduction of Pacific sardine (Sardinops sagax) off the Pacific northwestern United States, 2003–2005

The Pacific sardine (Sardinops sagax) is distributed along the west coast of North America from Baja California to British Columbia. This article presents estimates of biomass, spawning biomass, and related biological parameters based on four trawl-ichthyoplankton surveys conducted during July 2003 –March 2005 off Oregon and Washington. The trawl-based biomass estimates, serving as relative abundance, were 198,600 t (coefficient of variation [CV] = 0.51) in July 2003, 20,100 t (0.8) in March 2004, 77,900 t (0.34) in July 2004, and 30,100 t (0.72) in March 2005 over an area close to 200,000 km2. The biomass estimates, high in July and low in March, are a strong indication of migration in and out of this area. Sardine spawn in July off the Pacific Northwest (PNW) coast and none of the sampled fish had spawned in March. The estimated spawning biomass for July 2003 and July 2004 was 39,184 t (0.57) and 84,120 t (0.93), respectively. The average active female sardine in the PNW spawned every 20–40 days compared to every 6–8 days off California. The spawning habitat was located in the southeastern area off the PNW coast, a shift from the northwest area off the PNW coast in the 1990s. Egg production in off the PNW for 2003–04 was lower than that off California and that in the 1990s. Because the biomass of Pacific sardine off the PNW appears to be supported heavily by migratory fish from California, the sustainability of the local PNW population relies on the stability of the population off California, and on local oceanographic conditions for local residence

Stock assessment and management recommendations for Pacific sardine (Sardinops sagax) in 1997

The primary goal of sardine management as directed by the California Fish and Game Code is rehabilitation of the resource with an added objective of maximizing sustained harvest. Accordingly, the Code states that the annual sardine quota can be set at an amount greater than 1,000 tons, providing that the level of take allows for continued increase in the spawning population. We estimated the sardine population size to have been 464,000 short tons on July 1, 1997. Our estimate was based on output from a modified version of the integrated stock assessment model called CANSAR (Deriso et al. 1996). CANSAR is a forward-casting, age-structured analysis using fishery-dependent and fishery-independent data to obtain annual estimates of sardine abundance, year-class strength and age-specific fishing mortality for 1983 through the first semester of 1997. Non-linear least-squares criteria are used to find the best fit between model estimates and input data. Questions about stock structure and range extent remain major sources of uncertainty in assessing current sardine population biomass. Recent survey results and anecdotal evidence suggest increased sardine abundance in the Pacific Northwest and areas offshore from central and southern California. It is difficult to determine if those fish were part of the stock available to the California fishery. In an attempt to address this problem, the original CANSAR model was reconfigured into a Two-Area Migration Model (CANSAR-TAM) which accounted for sardine lost to the areas of the fishery and abundance surveys due to population expansion and net emigration. While the model includes guesses and major assumptions about net emigration and recruitment, it provides an estimate which is likely closer to biological reality than past assessments. The original CANSAR model was also used and estimates are provided for comparison. Based on the 1997 estimate of total biomass and the harvest formula used last year, we recommend a 1998 sardine harvest quota of 48,000 tons for the California fishery. The 1998 quota is a decrease of 11% from the final 1997 sardine harvest quota for California of 54,000 tons. (55pp.

Fecundity, egg deposition, and mortality of market squid (Lolilgo opalescens)

Loligo opalescens live less than a year and die after a short spawning period before all oocytes are expended. Potential fecundity (EP), the standing stock of all oocytes just before the onset of spawning, increased with dorsal mantle length (L), where EP = 29.8L. For the average female squid (L of 129 mm), EP was 3844 oocytes. During the spawning period, no oogonia were produced; therefore the standing stock of oocytes declined as they were ovulated. This decline in oocytes was correlated with a decline in mantle condition and an increase in the size of the smallest oocyte in the ovary. Close agreement between the decline in estimated body weight and standing stock of oocytes during the spawning period indicated that maturation and spawning of eggs could largely, if not entirely, be supported by the conversion of energy reserves in tissue. Loligo opalescens, newly recruited to the spawning population, ovulated about 36% of their potential fecundity during their first spawning day and fewer ova were released in subsequent days. Loligo opalescens do not spawn all of their oocytes; a small percentage of the spawning population may live long enough to spawn 78% of their potential fecundity. Loligo opalescens are taken in a spawning grounds fishery off California, where nearly all of the catch are mature spawning adults. Thirty-three percent of the potential fecundity of L. opalescens was deposited before they were taken by the fishery (December 1998−99). This observation led to the development of a management strategy based on monitoring the escapement of eggs from the fishery. The strategy requires estimation of the fecundity realized by the average squid in the population which is a function of egg deposition and mortality rates. A model indicated that the daily total mortality rate on the spawning ground may be about 0.45 and that the average adult may live only 1.67 days after spawning begins. The rate at which eggs escape the fishery was modeled and the sensitivity of changing daily rates of fishing mortality, natural mortality, and egg deposition was examined. A rapid method for monitoring the fecundity of the L. opalescens catch was developed

Stock assessment of Pacific sardine for 1998 with management recommendations for 1999

The primary goal of sardine management as directed by the California Fish and Game Code is rehabilitation of the resource with an added objective of maximizing sustained harvest. Accordingly, the Code states that the annual sardine quota can be set at an amount greater than 1,000 tons, providing that the level of take allows for continued increase in the spawning population. We estimated the sardine population size within the range of the fishery and survey data (Ensenada, Baja California to San Francisco, California) to have been 1,182,881 short tons on July 1, 1998. Our estimate was based on output from a modified version of the integrated stock assessment model called CANSAR (Deriso et al. 1996). CANSAR is a forward-casting, age-structured analysis using fishery-dependent and fishery-independent data to obtain annual estimates of sardine abundance, year-class strength and age-specific fishing mortality for 1983 through the first semester of 1998. Non-linear least-squares criteria are used to find the best fit between model estimates and input data. Questions about stock structure and range extent remain major sources of uncertainty in assessing current sardine population biomass. Recent survey results and anecdotal evidence suggest increased sardine abundance in the Pacific Northwest and areas offshore from central and southern California. It is difficult to determine if those fish were part of the stock available to the California fishery. Last year, in an attempt to address this problem, the original CANSAR model was reconfigured into a Two-Area Migration Model (CANSAR-TAM; Hill et al. 1998) which accounted for sardine lost to the areas of the fishery and abundance surveys due to population expansion and net emigration. While the model includes guesses and major assumptions about net emigration and recruitment, it provides an estimate which is likely closer to biological reality than original CANSAR assessments. Corroborative results from a new, preliminary sardine stock assessment model, 'SAM', are also presented in this report. Based on the 1998 estimate of age 1+ biomass within the range of the fishery and survey data, and a proposed harvest formula in the draft Coastal Pelagic Species Fishery Management Plan (Amendment 8), we recommend a 1999 sardine harvest quota of 132,800 tons for the California fishery. The 1999 quota is a significant increase from the final 1998 sardine harvest quota for California of 48,000 tons. (93pp.

Application of a stage-specific matrix model and length-cohort based analysis to assess the anchovy fishery in Catalan coastal waters (NW Mediterranean Sea)

11 pages, 3 figures, 6 tablesThis study describes trends in anchovy (Engraulis encrasicolus) population biomass in Catalan coastal waters of the northwestern Mediterranean Sea and relates empirical data to the demographic models in order to understand its dynamics and shed some light for future management of the stock. Classical fisheries models (length-cohort analysis and yield-per-recruit analysis) are applied together with the stage-specific Lefkovitch matrix model to detect population growth. Estimates of rates of growth, mortality, and fecundity were assembled for each biological stage. The results confirm and quantify the importance of early life stages on population trends and indicate how sensitive the overall biomass conditions at the current exploitation level, even though environmental variability is not considered, and might cause changes. In view of the fishermen's effort reduction, a 10% fishing mortality decrease on the fishery was also examined in a dynamic model to forecast the yields, simulating different stock-recruitment pattern

Where do egg production methods for estimating fish biomass go from here?

Special issue Egg Production Methods in Marine Fisheries.-- 6 pagesThe special theme volume of Fisheries Research is intended to synthesise the current understanding of the methods and applicability of egg production methods (EPM). It originates from a workshop in Athens which also focused on the future challenges to both the science and logistics of carrying out and using egg production methods. This synthesis addresses three interlinked challenges for those using EPM; how methods have, and need to be, improved, what added value can EPM provide directly to aid advice for management of the marine environment and lastly what extra understanding can EPM bring to marine science? EPM surveys offer some of the most intensive sampling of plankton and adult fish populations in fisheries science. They provide, and will probably provide further insights into fish reproductive processes, embryonic development and spatial and temporal variability in fish populations. Researchers should be encouraged to examine new methods for representative real-time sampling, swift processing of samples and integration of sampling of adults and plankton. EPM provides managers with many >added value> products on habitats and spawning and already provides platforms for monitoring hydrography, zooplankton distributions and acoustic back scatter. Some EPM surveys also incorporate monitoring of birds and sea mammals. EPM, together with aquaculture, has progressed understanding of fish reproductive biology and embryo development. EPM provides long time series of both the ichthyoplankton and fish reproductive traits thus enabling informed study of regime change, variability and ecosystem status. As the EPM become more developed, we expect that these contributions to marine science will increase. © 2012Peer Reviewe

Egg production methods in marine fisheries: An introduction

Special issue Egg Production Methods in Marine Fisheries.-- 5 pagesThis paper is an introduction of the Fisheries Research special issue on egg production methods (EPM) that emerged from a dedicated workshop held in Athens, Greece, in 2010. The workshop considered if EPMs are still valid today, it reviewed recent developments in the methods and discussed the utility of EPMs in the future. Importantly, experts from both the daily and the annual egg production methods took part in the workshop. This introduction provides the main concepts underlying EPMs. It also gives a brief history of EPM development over the last two decades with examples of their use worldwide. It provides a review on whether EPMs have fulfilled their objectives. Given their increased utilisation on new fish stocks, and their contribution to scientific advances, EPMs continue to be useful. However, concerns about the bias and precision of the methods remain, and a continuous effort to improve those issues together with the cost-efficiency of the methods is still required. © 2012.The workshop was sponsored and funded by FRESH (Fish Reproduction and Fisheries; COST Action FA0601; www.fresh-cost.org) and supported by the International Council for the Exploration of the Sea (ICES). We would like to thank FRESH for providing funds for the workshop and ICES for supporting the creation of the workshopPeer Reviewe

Publisher Correction: Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity

In the HTML version of this article initially published, the author groups ‘CHD Exome+ Consortium’, ‘EPIC-CVD Consortium’, ‘ExomeBP Consortium’, ‘Global Lipids Genetic Consortium’, ‘GoT2D Genes Consortium’, ‘EPIC InterAct Consortium’, ‘INTERVAL Study’, ‘ReproGen Consortium’, ‘T2D-Genes Consortium’, ‘The MAGIC Investigators’ and ‘Understanding Society Scientific Group’ appeared at the end of the author list but should have appeared earlier in the list, after author Krina T. Zondervan. The errors have been corrected in the HTML version of the article

Protein-altering variants associated with body mass index implicate pathways that control energy intake and expenditure in obesity

Genome-wide association studies (GWAS) have identified >250 loci for body mass index (BMI), implicating pathways related to neuronal biology. Most GWAS loci represent clusters of common, noncoding variants from which pinpointing causal genes remains challenging. Here we combined data from 718,734 individuals to discover rare and low-frequency (minor allele frequency (MAF) < 5%) coding variants associated with BMI. We identified 14 coding variants in 13 genes, of which 8 variants were in genes (ZBTB7B, ACHE, RAPGEF3, RAB21, ZFHX3, ENTPD6, ZFR2 and ZNF169) newly implicated in human obesity, 2 variants were in genes (MC4R and KSR2) previously observed to be mutated in extreme obesity and 2 variants were in GIPR. The effect sizes of rare variants are ~10 times larger than those of common variants, with the largest effect observed in carriers of an MC4R mutation introducing a stop codon (p.Tyr35Ter, MAF = 0.01%), who weighed ~7 kg more than non-carriers. Pathway analyses based on the variants associated with BMI confirm enrichment of neuronal genes and provide new evidence for adipocyte and energy expenditure biology, widening the potential of genetically supported therapeutic targets in obesity

Rare and low-frequency coding variants alter human adult height

Height is a highly heritable, classic polygenic trait with approximately 700 common associated variants identified through genome-wide association studies so far. Here, we report 83 height-associated coding variants with lower minor-allele frequencies (in the range of 0.1-4.8%) and effects of up to 2 centimetres per allele (such as those in IHH, STC2, AR and CRISPLD2), greater than ten times the average effect of common variants. In functional follow-up studies, rare height-increasing alleles of STC2 (giving an increase of 1-2 centimetres per allele) compromised proteolytic inhibition of PAPP-A and increased cleavage of